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Hi, I'm Jonathan //J535D165

Ever wondered what the ideal (scientific) workflow would look like? And what kind of tools you need for it? It's maybe an impossible question to anser, but many will say the workflow should be efficient, transparent, and reproducible. I don't know the answer as well, but I fully support these principles. Over the past years, I've used my GitHub profile to share and collaborate on projects aimed at developing the ideal academic workflow. The following projects are my top interest at the moment:

  • Data access: If you're looking for an easy way to download scientific data, be sure to check out Datahugger 👐 - the easiest way to download scientific data! I'm also involved in projects like pyalex (new!), cbsodata, and rispy.

  • Superfast reading: Can we make systematic reviews fun to work on by using AI for the boring 💤 parts? With ASReview and asreview.ai, we speed up systematic reviewing. I'm lead of ASReview's development team.

  • Transparent workflows: I'm experimenting with projects like scitree and scisort, which help and promote to use repoducible project folder structures.

  • Data linkage: I work on projects like recordlinkage and List of data matching software. Although my attention may sometimes waver from these projects, but they are still close to my heart ❤️.

In addtion to this, you can also find me at Utrecht University (in the Netherlands) as the project lead for the Open and FAIR Data and Software movement.

💬

Jonathan de Bruin's Projects

asreview-makita icon asreview-makita

Workflow generator for simulation studies using the command line interface of ASReview LAB

cbsodata icon cbsodata

Unofficial Statistics Netherlands (CBS) open data API client for Python

cbsshape icon cbsshape

Simple interface for CBS Wijk en Buurtkaart.

coronawatchnl icon coronawatchnl

Numbers concerning COVID-19 disease cases in The Netherlands by RIVM, LCPS, NICE, ECML, and Rijksoverheid.

darwincat icon darwincat

Shiny app visualizing the effects of carbonate stratigraphy on trait evolution

data-science-day icon data-science-day

Additional material for the Data Science Day (Utrecht University) workshop: "Data Engineering: Clean and Integrate Your Data!"

datahugger icon datahugger

One downloader for many scientific data and code repositories! DOI :open_hands: Data

jupyterfair icon jupyterfair

JupyterFAIR aims to provide a tool for seamless integration of Jupyter-based research environments and research data repositories.

osmenrich icon osmenrich

Enrich sf data with geographic features from OpenStreetMaps.

parcels icon parcels

Main code for Parcels (Probably A Really Computationally Efficient Lagrangian Simulator)

py3data icon py3data

A flexible and lightweight Python interface to the re3data.org database

pyalex icon pyalex

A Python library for OpenAlex (openalex.org)

pytacite icon pytacite

A flexible and lightweight Python interface to the DataCite database (datacite.org)

recordlinkage icon recordlinkage

A powerful and modular toolkit for record linkage and duplicate detection in Python

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